>Playing bonelab
>Game story is all "Dude you've gotta break out, get out of the system, don't play the way they intended, clip through shit and discover the truth! break the game bro!"
>But you actually are just meant to play it the intended way and where you can clip through things and break systems you just get punished for it by dying or having to restart the level
>Clipping through the big mysterious quarantine doors is just nothing, there's no level there being quarantined they're just set decoration

That seems really weird, like a narrative disconnect. 
I'd say they were going for a "Oh those messages weren't meant for you, you're here AFTER someone has already fucked it all up" but that isn't the case because "big anomaly" talks directly to you, so it just makes no sense.

Unfinished content? A concept they didn't see through to fruition? Yeah yeah I get it lava gang whatever, that's MODDING, which isn't what he's been talking about.